Viewing vlgr1-8-multi.table
| All-Atom Contacts |
Clashscore, all atoms: | 54.81 | 3rd percentile* (N=1784, all resolutions) |
| Clashscore is the number of serious steric overlaps (> 0.4 Å) per 1000 atoms. | |||
| Protein Geometry |
Poor rotamers | 0.00% | Goal: <1% |
| Ramachandran outliers | 0.00% | Goal: <0.2% | |
| Ramachandran favored | 95.54% | Goal: >98% | |
| Cβ deviations >0.25Å | 0 | Goal: 0 | |
| MolProbity score^ | 2.52 | 46th percentile* (N=27675, 0Å - 99Å) | |
| Residues with bad bonds: | 0.00% | Goal: 0% | |
| Residues with bad angles: | 1.75% | Goal: <0.1% | |
^ MolProbity score is defined as the following: 0.42574*log(1+clashscore) + 0.32996*log(1+max(0,pctRotOut-1)) + 0.24979*log(1+max(0,100-pctRamaFavored-2)) + 0.5
| Bond angles. | ||||||||
| Avg: 0.00 | Clashscore: 54.81 | Outliers: 0 of 112 | Poor rotamers: 0 of 99 | Outliers: 0 of 106 | Outliers: 0 of 114 | Outliers: 2 of 114 | ||
| A1002 | ASP | 0 | - | - | 20.2% (t0) chi angles: 183.9,137.2 | 0.005Å | - | - |
| A1003 | PRO | 0 | 0.507Å CD with A1027 ASN O | Favored (8.74%) Proline / -91.1,154.8 | 32% (Cg_exo) chi angles: 338.9 | 0.04Å | - | - |
| A1004 | ILE | 0 | - | Favored (29.8%) General case / -140.2,132.8 | 83.7% (mt) chi angles: 300.8,171.5 | 0.037Å | - | - |
| A1005 | TYR | 0 | - | Favored (23.65%) General case / -155.2,168.6 | 53.2% (p90) chi angles: 62.6,93.8 | 0.015Å | - | - |
| A1006 | PHE | 0 | 0.967Å CZ with A1092 LEU CD2 | Favored (36.21%) General case / -79.5,140.1 | 29.3% (m-85) chi angles: 289.4,127.2 | 0.018Å | - | - |
| A1007 | ALA | 0 | 0.489Å CB with A1025 LEU CD1 | Favored (4.04%) General case / -152.1,115.8 | - | 0.057Å | - | - |
| A1008 | GLU | 0 | - | Favored (95.66%) Pre-proline / -71.7,147.6 | 98.3% (mt-10) chi angles: 293.6,181.7,171.7 | 0.008Å | - | - |
| A1009 | PRO | 0 | - | Favored (12.42%) Proline / -77.8,-23.7 | 67.9% (Cg_endo) chi angles: 28 | 0.039Å | - | - |
| A1010 | ARG | 0 | - | Favored (53.61%) General case / -123.1,141.8 | 85.6% (mtt85) chi angles: 293.7,180.6,176.5,88.9 | 0.025Å | - | - |
| A1011 | VAL | 0 | - | Favored (55.35%) General case / -130.1,129.1 | 99.8% (t) chi angles: 178.5 | 0.04Å | - | - |
| A1012 | VAL | 0 | - | Favored (56.41%) General case / -107.9,119.6 | 99.8% (t) chi angles: 178.5 | 0.058Å | - | - |
| A1013 | ARG | 0 | 1.191Å CZ with A1020 ALA CB | Favored (41.08%) General case / -130.8,161.2 | 84.1% (mtp180) chi angles: 297.1,179.6,66.7,188.4 | 0.007Å | - | - |
| A1014 | VAL | 0 | - | Favored (25.68%) General case / -102.7,148.5 | 35.5% (m) chi angles: 297.9 | 0.044Å | - | - |
| A1015 | GLN | 0 | - | Favored (74.55%) General case / -64.8,-31.1 | 64% (tt0) chi angles: 183.6,176.4,29.7 | 0.002Å | - | - |
| A1016 | GLU | 0 | - | Favored (66.11%) General case / -69.7,-23.5 | 99.4% (mt-10) chi angles: 292.3,179.9,177.1 | 0.01Å | - | - |
| A1017 | GLY | 0 | - | Favored (83.03%) Glycine / -55.7,-41.0 | - | - | - | - |
| A1018 | GLU | 0 | - | Allowed (0.22%) General case / 75.9,-21.4 | 90% (mt-10) chi angles: 296.9,180.8,9.2 | 0.011Å | - | - |
| A1019 | THR | 0 | 0.828Å C with A1013 ARG NH1 | Favored (10.99%) General case / -160.3,143.3 | 8.8% (t) chi angles: 182.7 | 0.025Å | - | - |
| A1020 | ALA | 0 | 1.191Å CB with A1013 ARG CZ | Favored (40.58%) General case / -143.6,153.2 | - | 0.03Å | - | - |
| A1021 | ASN | 0 | - | Favored (45.66%) General case / -100.2,134.8 | 85.2% (m-20) chi angles: 293.9,313.8 | 0.039Å | - | - |
| Bond angles. | ||||||||
| Avg: 0.00 | Clashscore: 54.81 | Outliers: 0 of 112 | Poor rotamers: 0 of 99 | Outliers: 0 of 106 | Outliers: 0 of 114 | Outliers: 2 of 114 | ||
| A1022 | PHE | 0 | 0.527Å CE2 with A1109 VAL CG2 | Favored (52.43%) General case / -119.0,140.6 | 93.6% (m-85) chi angles: 295.5,86 | 0.045Å | - | - |
| A1023 | THR | 0 | - | Favored (49.9%) General case / -133.9,147.2 | 68.4% (p) chi angles: 62 | 0.007Å | - | - |
| A1024 | VAL | 0 | - | Favored (48.37%) General case / -121.1,143.1 | 9.1% (p) chi angles: 60.3 | 0.053Å | - | - |
| A1025 | LEU | 0 | 0.489Å CD1 with A1007 ALA CB | Favored (31.44%) General case / -118.1,155.7 | 6.7% (mp) chi angles: 289.7,77.8 | 0.014Å | - | - |
| A1026 | ARG | 0 | 0.454Å NH2 with A1029 SER O | Favored (60.67%) General case / -127.8,133.8 | 68.7% (ttp85) chi angles: 181.5,172.5,64.7,88.7 | 0.042Å | - | - |
| A1027 | ASN | 0 | 0.507Å O with A1003 PRO CD | Favored (52.43%) General case / -130.1,155.5 | 67.5% (m-80) chi angles: 294.7,281.5 | 0.032Å | - | - |
| A1028 | GLY | 0 | - | Favored (10.02%) Glycine / 106.0,-147.2 | - | - | - | - |
| A1029 | SER | 0 | 0.454Å O with A1026 ARG NH2 | Favored (17.17%) General case / -70.2,120.0 | 33.7% (t) chi angles: 175.4 | 0.007Å | - | - |
| A1030 | VAL | 0 | - | Favored (41.55%) General case / -80.9,-22.1 | 32.9% (m) chi angles: 300.2 | 0.02Å | - | - |
| A1031 | ASP | 0 | 1.022Å O with A1065 VAL CG2 | Favored (69.46%) General case / -62.0,-26.3 | 99.2% (m-20) chi angles: 288.1,165.7 | 0.034Å | - | - |
| A1032 | VAL | 0 | - | Favored (21.98%) General case / -111.0,158.0 | 34.2% (m) chi angles: 299 | 0.025Å | - | - |
| A1033 | THR | 0 | - | Favored (48%) General case / -70.3,142.7 | 96.4% (m) chi angles: 299.6 | 0.035Å | - | - |
| A1034 | CYS | 0 | - | Favored (36.04%) General case / -147.1,155.5 | 73.4% (m) chi angles: 296.9 | 0.018Å | - | - |
| A1035 | MET | 0 | 0.484Å N with A1096 THR CG2 | Favored (35.12%) General case / -148.2,154.5 | 75.4% (mtm) chi angles: 296,179.2,286.4 | 0.013Å | - | - |
| A1036 | VAL | 0 | - | Favored (28.9%) General case / -149.8,146.3 | 14.8% (p) chi angles: 63.8 | 0.061Å | - | - |
| A1037 | GLN | 0 | - | Favored (28.84%) General case / -109.3,150.1 | 93.8% (mt-30) chi angles: 296,181.3,315.1 | 0.026Å | - | - |
| A1038 | TYR | 0 | 0.894Å OH with A1057 LYS CE | Favored (54.76%) General case / -132.2,154.2 | 53.1% (p90) chi angles: 64.8,91.2 | 0.032Å | - | - |
| A1039 | ALA | 0 | - | Favored (34.94%) General case / -146.2,145.7 | - | 0.041Å | - | - |
| A1040 | THR | 0 | - | Favored (30.68%) General case / -78.3,153.3 | 81.6% (p) chi angles: 61 | 0.045Å | - | - |
| A1041 | LYS | 0 | - | Favored (54.22%) General case / -132.8,151.5 | 74.9% (mmtt) chi angles: 299,291,182.8,184.3 | 0.024Å | - | - |
| Bond angles. | ||||||||
| Avg: 0.00 | Clashscore: 54.81 | Outliers: 0 of 112 | Poor rotamers: 0 of 99 | Outliers: 0 of 106 | Outliers: 0 of 114 | Outliers: 2 of 114 | ||
| A1042 | ASP | 0 | - | Favored (45.58%) General case / -70.7,149.0 | 97.3% (m-20) chi angles: 289.4,167.2 | 0.026Å | - | - |
| A1043 | GLY | 0 | - | Favored (4.1%) Glycine / -144.6,-145.7 | - | - | - | - |
| A1044 | LYS | 0 | - | Favored (77.91%) General case / -64.2,-33.2 | 98.3% (mttt) chi angles: 289.9,179.8,179.5,178.3 | 0.046Å | - | - |
| A1045 | ALA | 0 | 0.538Å CA with A1051 ASP OD2 | Favored (28.93%) General case / -79.1,155.5 | - | 0.037Å | - | - |
| A1046 | THR | 0 | 0.541Å N with A1051 ASP OD2 | Favored (38.81%) General case / -107.1,141.4 | 67.8% (p) chi angles: 59.6 | 0.017Å | - | - |
| A1047 | ALA | 0 | - | Favored (30.92%) General case / -108.6,147.5 | - | 0.024Å | - | - |
| A1048 | ARG | 0 | - | Favored (13.79%) General case / 54.6,32.4 | 24.3% (ttt85) chi angles: 203.6,161.8,170.3,92.7 | 0.052Å | - | - |
| A1049 | GLU | 0 | 0.569Å O with A1053 ILE CG1 | Allowed (0.91%) General case / -159.5,-161.4 | 79.8% (mm-40) chi angles: 296.1,291,158.7 | 0.049Å | - | - |
| A1050 | ARG | 0 | 0.618Å CA with A1053 ILE CG1 | Favored (73.54%) General case / -54.7,-46.7 | 71% (ttp85) chi angles: 181.8,184.4,63.5,78.7 | 0.054Å | - | - |
| A1051 | ASP | 0 | 0.541Å OD2 with A1046 THR N | Favored (65.49%) General case / -67.7,-50.4 | 26.1% (m-20) chi angles: 288.8,109.2 | 0.026Å | - | - |
| A1052 | PHE | 0 | 1.326Å CZ with A1088 PHE CE2 | Allowed (1.67%) General case / -122.8,79.3 | 31.7% (m-85) chi angles: 299.9,73.7 | 0.056Å | - | - |
| A1053 | ILE | 0 | 1.263Å CD1 with A1077 ASN ND2 | Favored (18.98%) Pre-proline / -69.2,-45.9 | 97.3% (mt) chi angles: 293.2,168.4 | 0.031Å | - | - |
| A1054 | PRO | 0 | 0.583Å CD with A1077 ASN CB | Favored (49.33%) Proline / -67.3,-26.1 | 50.6% (Cg_exo) chi angles: 335.7 | 0.004Å | - | - |
| A1055 | VAL | 0 | 0.496Å CG1 with A1075 PHE N | Favored (2.98%) General case / -157.8,118.7 | 10% (p) chi angles: 60.9 | 0.047Å | - | 1 OUTLIER(S) worst is C-N-CA: -7.049 &sigma |
| A1056 | GLU | 0 | - | Favored (26.09%) General case / -88.3,145.9 | 42.8% (tt0) chi angles: 184.2,177.8,65.3 | 0.108Å | - | 1 OUTLIER(S) worst is N-CA-C: -4.889 &sigma |
| A1057 | LYS | 0 | 0.894Å CE with A1038 TYR OH | Favored (49.43%) General case / -133.7,144.0 | 87.9% (tttt) chi angles: 182.1,177.9,179.8,182.1 | 0.016Å | - | - |
| A1058 | GLY | 0 | 0.476Å O with A1059 GLU CG | Favored (4.68%) Glycine / -142.3,129.5 | - | - | - | - |
| A1059 | GLU | 0 | 0.476Å CG with A1058 GLY O | Favored (15.25%) General case / -156.7,173.3 | 78.3% (mm-40) chi angles: 295,289.9,159.4 | 0.003Å | - | - |
| A1060 | THR | 0 | - | Favored (61.74%) General case / -109.9,128.5 | 98.3% (m) chi angles: 299 | 0.046Å | - | - |
| A1061 | LEU | 0 | 0.611Å CD2 with A1038 TYR CE2 | Favored (56.54%) General case / -104.4,121.9 | 90.6% (mt) chi angles: 300.1,176.6 | 0.051Å | - | - |
| Bond angles. | ||||||||
| Avg: 0.00 | Clashscore: 54.81 | Outliers: 0 of 112 | Poor rotamers: 0 of 99 | Outliers: 0 of 106 | Outliers: 0 of 114 | Outliers: 2 of 114 | ||
| A1062 | ILE | 0 | - | Favored (62.17%) General case / -111.7,129.7 | 91.9% (mt) chi angles: 298.6,169.9 | 0.04Å | - | - |
| A1063 | PHE | 0 | - | Favored (33.5%) General case / -112.5,113.1 | 88.4% (m-85) chi angles: 295,83.3 | 0.036Å | - | - |
| A1064 | GLU | 0 | - | Favored (25.11%) General case / -76.8,163.2 | 81.4% (mm-40) chi angles: 296.7,293.3,154 | 0.041Å | - | - |
| A1065 | VAL | 0 | 1.022Å CG2 with A1031 ASP O | Favored (51.37%) General case / -62.7,134.1 | 12% (p) chi angles: 66.1 | 0.052Å | - | - |
| A1066 | GLY | 0 | - | Favored (61.4%) Glycine / 98.7,-3.9 | - | - | - | - |
| A1067 | SER | 0 | - | Favored (57.2%) General case / -111.6,120.4 | 36.1% (t) chi angles: 175.8 | 0.015Å | - | - |
| A1068 | ARG | 0 | - | Favored (43.4%) General case / -79.1,-34.7 | 99.8% (mtt180) chi angles: 291,178.4,179.7,174.8 | 0.03Å | - | - |
| A1069 | GLN | 0 | - | Favored (36.33%) General case / -142.2,161.5 | 21.1% (pt20) chi angles: 64.1,183,70.9 | 0.002Å | - | - |
| A1070 | GLN | 0 | - | Favored (48.95%) General case / -135.4,146.8 | 72.5% (tp60) chi angles: 180.5,67,55.7 | 0.027Å | - | - |
| A1071 | SER | 0 | - | Favored (50.57%) General case / -127.4,149.6 | 96.6% (p) chi angles: 63.8 | 0.024Å | - | - |
| A1072 | ILE | 0 | 0.423Å CB with A1057 LYS NZ | Favored (39.28%) General case / -144.6,150.0 | 2.6% (pp) chi angles: 63.3,90.4 | 0.047Å | - | - |
| A1073 | SER | 0 | - | Favored (24.97%) General case / -104.7,150.8 | 93% (p) chi angles: 63.1 | 0.019Å | - | - |
| A1074 | ILE | 0 | - | Favored (59.03%) General case / -128.7,136.5 | 88.9% (mt) chi angles: 299.4,170.6 | 0.046Å | - | - |
| A1075 | PHE | 0 | 0.496Å N with A1055 VAL CG1 | Favored (42.94%) General case / -95.4,134.0 | 91.8% (m-85) chi angles: 292.8,85.6 | 0.004Å | - | - |
| A1076 | VAL | 0 | - | Favored (27.52%) General case / -102.0,146.3 | 12.4% (p) chi angles: 62.3 | 0.056Å | - | - |
| A1077 | ASN | 0 | 1.263Å ND2 with A1053 ILE CD1 | Favored (55.83%) General case / -101.6,125.0 | 27% (t30) chi angles: 184.4,74.4 | 0.027Å | - | - |
| A1078 | GLU | 0 | - | Favored (17.53%) General case / -89.3,158.1 | 25.2% (pt-20) chi angles: 66.2,180.9,25.1 | 0.014Å | - | - |
| A1079 | ASP | 0 | - | Favored (12.34%) General case / -161.6,173.8 | 20.6% (p30) chi angles: 60.7,33.2 | 0.014Å | - | - |
| A1080 | GLY | 0 | - | Allowed (0.36%) Glycine / -114.1,65.6 | - | - | - | - |
| A1081 | ILE | 0 | - | Favored (20%) Pre-proline / -142.3,137.8 | 85.4% (mt) chi angles: 300.3,171.1 | 0.054Å | - | - |
| Bond angles. | ||||||||
| Avg: 0.00 | Clashscore: 54.81 | Outliers: 0 of 112 | Poor rotamers: 0 of 99 | Outliers: 0 of 106 | Outliers: 0 of 114 | Outliers: 2 of 114 | ||
| A1082 | PRO | 0 | - | Favored (52.74%) Proline / -73.1,147.2 | 56.9% (Cg_endo) chi angles: 26.1 | 0.039Å | - | - |
| A1083 | GLU | 0 | 0.531Å OE1 with A1050 ARG NH2 | Favored (30.88%) General case / -153.1,163.9 | 23.2% (pt-20) chi angles: 63.6,183.2,174.5 | 0.028Å | - | - |
| A1084 | THR | 0 | - | Favored (4.39%) General case / -97.4,-179.0 | 56.6% (p) chi angles: 65.3 | 0.044Å | - | - |
| A1085 | ASP | 0 | - | Favored (52.68%) General case / -65.5,143.0 | 97.3% (m-20) chi angles: 289.4,167.3 | 0.03Å | - | - |
| A1086 | GLU | 0 | - | Favored (12.46%) Pre-proline / -148.3,135.9 | 57.9% (mt-10) chi angles: 296.5,181,122.4 | 0.011Å | - | - |
| A1087 | PRO | 0 | - | Allowed (1.85%) Proline / -101.8,162.9 | 94.3% (Cg_endo) chi angles: 32.2 | 0.053Å | - | - |
| A1088 | PHE | 0 | 1.326Å CE2 with A1052 PHE CZ | Favored (31.05%) General case / -145.0,163.3 | 7.6% (p90) chi angles: 64.4,111.9 | 0.053Å | - | - |
| A1089 | TYR | 0 | - | Favored (48.89%) General case / -126.3,151.8 | 94.4% (m-85) chi angles: 298.1,87.3 | 0.006Å | - | - |
| A1090 | ILE | 0 | - | Favored (62.09%) General case / -113.3,126.6 | 5.1% (mp) chi angles: 298.9,85.9 | 0.077Å | - | - |
| A1091 | ILE | 0 | 0.507Å CG1 with A1106 VAL CG2 | Favored (40.08%) General case / -120.0,148.3 | 20.6% (tt) chi angles: 187.3,165.9 | 0.029Å | - | - |
| A1092 | LEU | 0 | 0.967Å CD2 with A1006 PHE CZ | Favored (29.62%) General case / -105.0,146.3 | 85.7% (mt) chi angles: 301.4,176.3 | 0.019Å | - | - |
| A1093 | LEU | 0 | - | Favored (11.4%) General case / -164.0,172.8 | 2.7% (pt?) chi angles: 71.4,166.6 | 0.01Å | - | - |
| A1094 | ASN | 0 | - | Favored (13.52%) General case / 54.6,50.8 | 87.8% (m-20) chi angles: 296.5,320.3 | 0.015Å | - | - |
| A1095 | SER | 0 | 0.462Å CB with A1099 THR OG1 | Favored (35.89%) General case / -71.7,155.2 | 85.9% (p) chi angles: 68 | 0.036Å | - | - |
| A1096 | THR | 0 | 0.484Å CG2 with A1035 MET N | Favored (6.53%) General case / -65.0,168.5 | 75% (p) chi angles: 61.7 | 0.041Å | - | - |
| A1097 | GLY | 0 | - | Favored (94.3%) Glycine / -58.3,-42.2 | - | - | - | - |
| A1098 | ASP | 0 | - | Favored (73.74%) General case / -64.6,-30.4 | 99.2% (m-20) chi angles: 288.1,165.7 | 0.004Å | - | - |
| A1099 | THR | 0 | 0.462Å OG1 with A1095 SER CB | Favored (18.29%) General case / -89.2,154.6 | 80.8% (p) chi angles: 61.3 | 0.035Å | - | - |
| A1100 | VAL | 0 | - | Favored (53.67%) General case / -132.0,133.3 | 99.4% (t) chi angles: 178.5 | 0.059Å | - | - |
| A1101 | VAL | 0 | - | Favored (26.16%) General case / -82.1,153.4 | 89.6% (t) chi angles: 175.3 | 0.028Å | - | - |
| Bond angles. | ||||||||
| Avg: 0.00 | Clashscore: 54.81 | Outliers: 0 of 112 | Poor rotamers: 0 of 99 | Outliers: 0 of 106 | Outliers: 0 of 114 | Outliers: 2 of 114 | ||
| A1102 | TYR | 0 | 0.419Å CG with A1103 GLN N | Favored (19.56%) General case / -134.8,170.7 | 89.2% (t80) chi angles: 181.4,77.7 | 0.021Å | - | - |
| A1103 | GLN | 0 | 0.419Å N with A1102 TYR CG | Favored (47.44%) General case / -67.6,133.9 | 66.4% (tt0) chi angles: 185.2,176.6,12.4 | 0.03Å | - | - |
| A1104 | TYR | 0 | - | Favored (48.01%) General case / -95.6,129.6 | 31.9% (m-85) chi angles: 292.7,71.8 | 0.015Å | - | - |
| A1105 | GLY | 0 | - | Favored (55.24%) Glycine / -77.7,-31.8 | - | - | - | - |
| A1106 | VAL | 0 | 0.507Å CG2 with A1091 ILE CG1 | Favored (63.47%) General case / -122.8,129.5 | 90.2% (t) chi angles: 177.9 | 0.04Å | - | - |
| A1107 | ALA | 0 | - | Favored (18.5%) General case / -88.8,154.6 | - | 0.029Å | - | - |
| A1108 | THR | 0 | - | Favored (59.01%) General case / -119.5,136.0 | 95.7% (m) chi angles: 299.7 | 0.042Å | - | - |
| A1109 | VAL | 0 | 0.745Å CG1 with A1088 PHE CE2 | Favored (59.39%) General case / -127.7,129.6 | 99.2% (t) chi angles: 178.5 | 0.04Å | - | - |
| A1110 | ILE | 0 | - | Favored (62.75%) General case / -114.8,130.0 | 91.7% (mt) chi angles: 298.6,169.9 | 0.048Å | - | - |
| A1111 | ILE | 0 | 0.447Å CG1 with A1052 PHE CZ | Favored (38.73%) General case / -102.4,116.0 | 48.6% (mm) chi angles: 304.2,301.2 | 0.043Å | - | - |
| A1112 | GLU | 0 | - | Favored (37.42%) General case / -80.3,137.7 | 88.2% (tt0) chi angles: 184.6,177.6,2.2 | 0.035Å | - | - |
| A1113 | ALA | 0 | - | Favored (33.84%) General case / -84.5,139.7 | - | 0.027Å | - | - |
| A1114 | ASN | 0 | - | Favored (23.36%) General case / -82.1,-41.9 | 66.2% (m-80) chi angles: 287.6,281.9 | 0.029Å | - | - |
| A1115 | ASP | 0 | - | - | 47.8% (t0) chi angles: 189.7,18 | 0.035Å | - | - |